PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 409925
Common NameSELMODRAFT_409925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family SRS
Protein Properties Length: 604aa    MW: 61827.2 Da    PI: 8.2228
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
409925genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.11.1e-603665414153
  DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss.. 104
             g+a+C++CGnqakkdC+++RCRtCCksr++dC+thvkstWvpaakrrerq+ +aaa +     + + +skr+r+l     s+++++++  + + + ++     
  409925 366 GGATCKECGNQAKKDCQFQRCRTCCKSRNYDCSTHVKSTWVPAAKRRERQALEAAAIAAG---QPRPRSKRTRSLALGGGSSSAAAQVGGGMTANPSSLLGlp 465
             6789*********************************************99998875443...4556677777775555555555555544433333322245 PP

  DUF702 105 ...........................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                        lP+ev+++a+f+cv+v++++dge+e+aYq++v+igGhvfkG+LydqG+e
  409925 466 gpssprssadlpvflplytaassyrgvLPPEVRAQALFKCVKVTGIEDGENEYAYQATVKIGGHVFKGVLYDQGVE 541
             677899999*****************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-57367541IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.8E-25369411IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.0E-27493540IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MIYRVLDENS FDLGPRYRNC SVVLGGRELL REKNPAAVAP AVVESRTGSS TTTRDLIGAS  60
SSGGGSTTPP WIVPSSRDWL LDPGGPGEHD HHGGVIQSAA SGAGGSDGWG RAVGYGFVGS  120
HPSPGDGGLG PGGGGGGGGG DGGGGASGLG LAPHHHLHLR DILGRGPASE EFGYHQLHQQ  180
HQRASLRGSS EHAHHHHHHP GEQGGDQGGQ GSRVASFEAY ETTRNVGGIG LLRTGLEAAA  240
AAVGGAPDPK SVADHPHHHH HHHHAPWASA PPPSVRELSG ARGIDVVPLA ERFSLEAAAA  300
AAQEKNPHPL QLVQIQGGAQ QQAQQNPITS VALIQSQNPS PSQQQQQQQG TDSSSSRPHG  360
RGHQPGGATC KECGNQAKKD CQFQRCRTCC KSRNYDCSTH VKSTWVPAAK RRERQALEAA  420
AIAAGQPRPR SKRTRSLALG GGSSSAAAQV GGGMTANPSS LLGLPGPSSP RSSADLPVFL  480
PLYTAASSYR GVLPPEVRAQ ALFKCVKVTG IEDGENEYAY QATVKIGGHV FKGVLYDQGV  540
EAPSAAAAAP AAAAPGGVAH QAAPIAGLAD LQLGASRSSM PSSSGYLDPS QIYGSTTLFG  600
GMA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969095.10.0hypothetical protein SELMODRAFT_409925
TrEMBLD8RCW60.0D8RCW6_SELML; Putative uncharacterized protein
STRINGEFJ302110.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.16e-26Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]